• 00:00 1.
    Review
  • 01:33 2.
    Gene Ontology
  • 04:58 3.
    Pathway Analysis
  • 08:54 4.
    Ingenuity Pathway Analysis (IPA)
  • 12:10 5.
    Pathway Analysis
  • 15:21 6.
    MetaCore
  • 15:41 7.
    GeneMANIA
  • 16:45 8.
    Gene Set Enrichment Analysis
  • 24:09 9.
    Gene Set Enrichment Analysis
  • 25:29 10.
    MSigDB Collections
  • 26:34 11.
    Pathway Analysis
  • 27:43 12.
    Color Objects in KEGG Pathways
  • 28:19 13.
    BIOCARTA Pathway
  • 28:43 14.
    The Database for Annotation, Visualization and Integrated Discovery (DAVID)
  • 29:37 15.
    Reference Databases in DAVID
  • 30:27 16.
    Transcription Factor Motif Search1
  • 33:36 17.
    Ways to describe DNA motif
  • 39:24 18.
    Transcription Factor Motif Search3
  • 42:02 19.
    Direct TFM search
  • 44:15 20.
    Position weight matrix method
  • 45:04 21.
    Greedy Algorithm
  • 47:32 22.
    C. Phylogenetic footprinting methodUse orthologous promoter sequences of a single gene from multiple speciese.g., ConSite, Phylonet, Phylo-ScanProblems:If the species are too closely related, seq. alignment is obvious but uninformativeIf the species are
  • 48:39 23.
    MOTIF Similarity Detection Tool
  • 49:17 24.
    example
  • 50:38 25.
    Databases
  • 51:08 26.
    Nucleotide Sequences
  • 51:46 27.
    Gene Expression
  • 52:49 28.
    GEO Structure
  • 55:34 29.
    GEO2R
  • 56:05 30.
    Transcription Factor Binding Site
  • 56:19 31.
    Genome Browsers
  • 57:12 32.
    UCSC Genome Browser
  • 58:16 33.
    Multipurpose Portals
  • 58:35 34.
    Workflow of Array Analysis
  • 59:29 35.
    Array Analysis1
  • 59:56 36.
    Array Analysis2
  • 1:00:19 37.
    Array Analysis3
  • 1:00:45 38.
    Array Analysis4
  • 1:00:47 39.
    Array Analysis3
  • 1:01:01 40.
    Array Analysis4
  • 1:01:22 41.
    Array Analysis5
  • Index
  • Notes
  • Comment
  • Fullscreen
Comparative Gene-Expression Analysis I: Hybridization-based techniques (0323)
Duration: 1:02:03, Browse: 525, Last Updated: 2021-03-23
    • 00:00 1.
      Review
    • 01:33 2.
      Gene Ontology
    • 04:58 3.
      Pathway Analysis
    • 08:54 4.
      Ingenuity Pathway Analysis (IPA)
    • 12:10 5.
      Pathway Analysis
    • 15:21 6.
      MetaCore
    • 15:41 7.
      GeneMANIA
    • 16:45 8.
      Gene Set Enrichment Analysis
    • 24:09 9.
      Gene Set Enrichment Analysis
    • 25:29 10.
      MSigDB Collections
    • 26:34 11.
      Pathway Analysis
    • 27:43 12.
      Color Objects in KEGG Pathways
    • 28:19 13.
      BIOCARTA Pathway
    • 28:43 14.
      The Database for Annotation, Visualization and Integrated Discovery (DAVID)
    • 29:37 15.
      Reference Databases in DAVID
    • 30:27 16.
      Transcription Factor Motif Search1
    • 33:36 17.
      Ways to describe DNA motif
    • 39:24 18.
      Transcription Factor Motif Search3
    • 42:02 19.
      Direct TFM search
    • 44:15 20.
      Position weight matrix method
    • 45:04 21.
      Greedy Algorithm
    • 47:32 22.
      C. Phylogenetic footprinting methodUse orthologous promoter sequences of a single gene from multiple speciese.g., ConSite, Phylonet, Phylo-ScanProblems:If the species are too closely related, seq. alignment is obvious but uninformativeIf the species are
    • 48:39 23.
      MOTIF Similarity Detection Tool
    • 49:17 24.
      example
    • 50:38 25.
      Databases
    • 51:08 26.
      Nucleotide Sequences
    • 51:46 27.
      Gene Expression
    • 52:49 28.
      GEO Structure
    • 55:34 29.
      GEO2R
    • 56:05 30.
      Transcription Factor Binding Site
    • 56:19 31.
      Genome Browsers
    • 57:12 32.
      UCSC Genome Browser
    • 58:16 33.
      Multipurpose Portals
    • 58:35 34.
      Workflow of Array Analysis
    • 59:29 35.
      Array Analysis1
    • 59:56 36.
      Array Analysis2
    • 1:00:19 37.
      Array Analysis3
    • 1:00:45 38.
      Array Analysis4
    • 1:00:47 39.
      Array Analysis3
    • 1:01:01 40.
      Array Analysis4
    • 1:01:22 41.
      Array Analysis5
    Location
    Folder name
    2021
    Author
    賴亮全
    Branch
    賴亮全教授
    Created
    2021-03-23 16:20:25
    Last Updated
    2021-03-23 18:08:25
    Duration
    1:02:03