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00:30
1.
Applications
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02:41
2.
Traditional Microbial Genomics
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01:48
3.
What is Metagenomics?
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02:21
4.
The Road to Metagenomics
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02:44
5.
Applications of Microbiome
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00:43
6.
Human Microbiome Project
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00:59
7.
Microbiome–innate-immune-system interactions are involved in multifactorial diseases
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01:21
8.
Gut microbiota enhance Parkinson's Disease
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01:34
9.
古籍糞便用藥
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04:16
10.
Metagenomic Approaches
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04:02
11.
16s-RNA Sequencing
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00:31
12.
Qiime2
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01:11
13.
EasyMAP
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01:49
14.
Whole Genome Shotgun Metagenomics
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01:32
15.
Operational Taxonomic Unit & Binning
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00:41
16.
DADA2 ( Divisive Amplicon Denoising Algorithm)
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01:57
17.
Analytic pipeline
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02:15
18.
Alpha diversity: species richness (and evenness) within a single sample [local scale] Beta diversity: change in species composition across a collection of samples [habitats]Gamma diversity: total species richness across an environmental gradient [landscap
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00:57
19.
Alpha Diversity: Observed OTU
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01:02
20.
Alpha Diversity: Faith's Phylogenetic Diversity
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01:19
21.
Alpha Diversity: Evenness
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00:49
22.
Example: Alpha Diversity
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00:33
23.
Plot: Alpha Diversity
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00:15
24.
Beta diversity
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00:46
25.
Principal Coordinate Analysis (PCoA)
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00:39
26.
Example: PCoA
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01:08
27.
Species Richness
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00:50
28.
Plot: beta diversity
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02:51
29.
Common Pitfalls in Comparing Relative Abundance
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03:40
30.
Linear discriminant analysis (LDA) Effect Size
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03:17
31.
Function Prediction: PICRUSt
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00:51
32.
Tax4Fun
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00:21
33.
Phneotypes classification
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01:29
34.
Microbial Colonization
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00:50
35.
In Vitro Functional Metagenomics
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02:22
36.
In Vivo Functional Metagenomics