Metagenomics (0601) | 賴亮全實驗室

索引

00:00 1.
Applications
00:30 2.
Traditional Microbial Genomics
03:11 3.
What is Metagenomics?
05:00 4.
The Road to Metagenomics
07:21 5.
Applications of Microbiome
10:06 6.
Human Microbiome Project
10:49 7.
Microbiome–innate-immune-system interactions are involved in multifactorial diseases
11:49 8.
Gut microbiota enhance Parkinson's Disease
13:10 9.
古籍糞便用藥
14:45 10.
Metagenomic Approaches
19:02 11.
16s-RNA Sequencing
23:04 12.
Qiime2
23:35 13.
EasyMAP
24:47 14.
Whole Genome Shotgun Metagenomics
26:37 15.
Operational Taxonomic Unit & Binning
28:09 16.
DADA2 ( Divisive Amplicon Denoising Algorithm)
28:51 17.
Analytic pipeline
30:48 18.
Alpha diversity: species richness (and evenness) within a single sample [local scale] Beta diversity: change in species composition across a collection of samples [habitats]Gamma diversity: total species richness across an environmental gradient [landscap
33:03 19.
Alpha Diversity: Observed OTU
34:00 20.
Alpha Diversity: Faith's Phylogenetic Diversity
35:03 21.
Alpha Diversity: Evenness
36:22 22.
Example: Alpha Diversity
37:11 23.
Plot: Alpha Diversity
37:45 24.
Beta diversity
38:00 25.
Principal Coordinate Analysis (PCoA)
38:47 26.
Example: PCoA
39:26 27.
Species Richness
40:35 28.
Plot: beta diversity
41:25 29.
Common Pitfalls in Comparing Relative Abundance
44:17 30.
Linear discriminant analysis (LDA) Effect Size
47:58 31.
Function Prediction: PICRUSt
51:15 32.
Tax4Fun
52:07 33.
Phneotypes classification
52:28 34.
Microbial Colonization
53:58 35.
In Vitro Functional Metagenomics
54:49 36.
In Vivo Functional Metagenomics

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討論

00:00 1.
Applications
00:30 2.
Traditional Microbial Genomics
03:11 3.
What is Metagenomics?
05:00 4.
The Road to Metagenomics
07:21 5.
Applications of Microbiome
10:06 6.
Human Microbiome Project
10:49 7.
Microbiome–innate-immune-system interactions are involved in multifactorial diseases
11:49 8.
Gut microbiota enhance Parkinson's Disease
13:10 9.
古籍糞便用藥
14:45 10.
Metagenomic Approaches
19:02 11.
16s-RNA Sequencing
23:04 12.
Qiime2
23:35 13.
EasyMAP
24:47 14.
Whole Genome Shotgun Metagenomics
26:37 15.
Operational Taxonomic Unit & Binning
28:09 16.
DADA2 ( Divisive Amplicon Denoising Algorithm)
28:51 17.
Analytic pipeline
30:48 18.
Alpha diversity: species richness (and evenness) within a single sample [local scale] Beta diversity: change in species composition across a collection of samples [habitats]Gamma diversity: total species richness across an environmental gradient [landscap
33:03 19.
Alpha Diversity: Observed OTU
34:00 20.
Alpha Diversity: Faith's Phylogenetic Diversity
35:03 21.
Alpha Diversity: Evenness
36:22 22.
Example: Alpha Diversity
37:11 23.
Plot: Alpha Diversity
37:45 24.
Beta diversity
38:00 25.
Principal Coordinate Analysis (PCoA)
38:47 26.
Example: PCoA
39:26 27.
Species Richness
40:35 28.
Plot: beta diversity
41:25 29.
Common Pitfalls in Comparing Relative Abundance
44:17 30.
Linear discriminant analysis (LDA) Effect Size
47:58 31.
Function Prediction: PICRUSt
51:15 32.
Tax4Fun
52:07 33.
Phneotypes classification
52:28 34.
Microbial Colonization
53:58 35.
In Vitro Functional Metagenomics
54:49 36.
In Vivo Functional Metagenomics

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索引
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Metagenomics (0601)

長度: 57:12, 瀏覽: 569, 最近修訂: 2021-06-06

00:00 1.
Applications
00:30 2.
Traditional Microbial Genomics
03:11 3.
What is Metagenomics?
05:00 4.
The Road to Metagenomics
07:21 5.
Applications of Microbiome
10:06 6.
Human Microbiome Project
10:49 7.
Microbiome–innate-immune-system interactions are involved in multifactorial diseases
11:49 8.
Gut microbiota enhance Parkinson's Disease
13:10 9.
古籍糞便用藥
14:45 10.
Metagenomic Approaches
19:02 11.
16s-RNA Sequencing
23:04 12.
Qiime2
23:35 13.
EasyMAP
24:47 14.
Whole Genome Shotgun Metagenomics
26:37 15.
Operational Taxonomic Unit & Binning
28:09 16.
DADA2 ( Divisive Amplicon Denoising Algorithm)
28:51 17.
Analytic pipeline
30:48 18.
Alpha diversity: species richness (and evenness) within a single sample [local scale] Beta diversity: change in species composition across a collection of samples [habitats]Gamma diversity: total species richness across an environmental gradient [landscap
33:03 19.
Alpha Diversity: Observed OTU
34:00 20.
Alpha Diversity: Faith's Phylogenetic Diversity
35:03 21.
Alpha Diversity: Evenness
36:22 22.
Example: Alpha Diversity
37:11 23.
Plot: Alpha Diversity
37:45 24.
Beta diversity
38:00 25.
Principal Coordinate Analysis (PCoA)
38:47 26.
Example: PCoA
39:26 27.
Species Richness
40:35 28.
Plot: beta diversity
41:25 29.
Common Pitfalls in Comparing Relative Abundance
44:17 30.
Linear discriminant analysis (LDA) Effect Size
47:58 31.
Function Prediction: PICRUSt
51:15 32.
Tax4Fun
52:07 33.
Phneotypes classification
52:28 34.
Microbial Colonization
53:58 35.
In Vitro Functional Metagenomics
54:49 36.
In Vivo Functional Metagenomics

位置

資料夾名稱

2021

發表人

賴亮全

單位

賴亮全教授

建立

2021-05-31 17:04:25

最近修訂

2021-06-06 23:57:54

長度

57:12