• 00:00 1.
    Applications
  • 00:30 2.
    Traditional Microbial Genomics
  • 03:11 3.
    What is Metagenomics?
  • 05:00 4.
    The Road to Metagenomics
  • 07:21 5.
    Applications of Microbiome
  • 10:06 6.
    Human Microbiome Project
  • 10:49 7.
    Microbiome–innate-immune-system interactions are involved in multifactorial diseases
  • 11:49 8.
    Gut microbiota enhance Parkinson's Disease
  • 13:10 9.
    古籍糞便用藥
  • 14:45 10.
    Metagenomic Approaches
  • 19:02 11.
    16s-RNA Sequencing
  • 23:04 12.
    Qiime2
  • 23:35 13.
    EasyMAP
  • 24:47 14.
    Whole Genome Shotgun Metagenomics
  • 26:37 15.
    Operational Taxonomic Unit & Binning
  • 28:09 16.
    DADA2 ( Divisive Amplicon Denoising Algorithm)
  • 28:51 17.
    Analytic pipeline
  • 30:48 18.
    Alpha diversity: species richness (and evenness) within a single sample [local scale] Beta diversity: change in species composition across a collection of samples [habitats]Gamma diversity: total species richness across an environmental gradient [landscap
  • 33:03 19.
    Alpha Diversity: Observed OTU
  • 34:00 20.
    Alpha Diversity: Faith's Phylogenetic Diversity
  • 35:03 21.
    Alpha Diversity: Evenness
  • 36:22 22.
    Example: Alpha Diversity
  • 37:11 23.
    Plot: Alpha Diversity
  • 37:45 24.
    Beta diversity
  • 38:00 25.
    Principal Coordinate Analysis (PCoA)
  • 38:47 26.
    Example: PCoA
  • 39:26 27.
    Species Richness
  • 40:35 28.
    Plot: beta diversity
  • 41:25 29.
    Common Pitfalls in Comparing Relative Abundance
  • 44:17 30.
    Linear discriminant analysis (LDA) Effect Size
  • 47:58 31.
    Function Prediction: PICRUSt
  • 51:15 32.
    Tax4Fun
  • 52:07 33.
    Phneotypes classification
  • 52:28 34.
    Microbial Colonization
  • 53:58 35.
    In Vitro Functional Metagenomics
  • 54:49 36.
    In Vivo Functional Metagenomics
  • Index
  • Notes
  • Comment
  • Fullscreen
Metagenomics (0601)
Duration: 57:12, Browse: 581, Last Updated: 2021-06-06
    • 00:00 1.
      Applications
    • 00:30 2.
      Traditional Microbial Genomics
    • 03:11 3.
      What is Metagenomics?
    • 05:00 4.
      The Road to Metagenomics
    • 07:21 5.
      Applications of Microbiome
    • 10:06 6.
      Human Microbiome Project
    • 10:49 7.
      Microbiome–innate-immune-system interactions are involved in multifactorial diseases
    • 11:49 8.
      Gut microbiota enhance Parkinson's Disease
    • 13:10 9.
      古籍糞便用藥
    • 14:45 10.
      Metagenomic Approaches
    • 19:02 11.
      16s-RNA Sequencing
    • 23:04 12.
      Qiime2
    • 23:35 13.
      EasyMAP
    • 24:47 14.
      Whole Genome Shotgun Metagenomics
    • 26:37 15.
      Operational Taxonomic Unit & Binning
    • 28:09 16.
      DADA2 ( Divisive Amplicon Denoising Algorithm)
    • 28:51 17.
      Analytic pipeline
    • 30:48 18.
      Alpha diversity: species richness (and evenness) within a single sample [local scale] Beta diversity: change in species composition across a collection of samples [habitats]Gamma diversity: total species richness across an environmental gradient [landscap
    • 33:03 19.
      Alpha Diversity: Observed OTU
    • 34:00 20.
      Alpha Diversity: Faith's Phylogenetic Diversity
    • 35:03 21.
      Alpha Diversity: Evenness
    • 36:22 22.
      Example: Alpha Diversity
    • 37:11 23.
      Plot: Alpha Diversity
    • 37:45 24.
      Beta diversity
    • 38:00 25.
      Principal Coordinate Analysis (PCoA)
    • 38:47 26.
      Example: PCoA
    • 39:26 27.
      Species Richness
    • 40:35 28.
      Plot: beta diversity
    • 41:25 29.
      Common Pitfalls in Comparing Relative Abundance
    • 44:17 30.
      Linear discriminant analysis (LDA) Effect Size
    • 47:58 31.
      Function Prediction: PICRUSt
    • 51:15 32.
      Tax4Fun
    • 52:07 33.
      Phneotypes classification
    • 52:28 34.
      Microbial Colonization
    • 53:58 35.
      In Vitro Functional Metagenomics
    • 54:49 36.
      In Vivo Functional Metagenomics
    Location
    Folder name
    2021
    Author
    賴亮全
    Branch
    賴亮全教授
    Created
    2021-05-31 17:04:25
    Last Updated
    2021-06-06 23:57:54
    Duration
    57:12