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00:00
1.
DNA-Protein interaction
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00:08
2.
Interaction Between Proteins and DNA
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01:22
3.
Chromatin Immunoprecipitation (ChIP)
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03:41
4.
Antigen vs Antibody
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06:16
5.
Antibody Structure & Isotype
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07:33
6.
Polyclonal Antibody: antibody preparations from immunized animals contain different antibodies produced by many B cell clonesMonoclonal Antibody:homogeneous antibody preparations produced in laboratoryconsist of a single type of antigen binding site (sing
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08:15
7.
How to make monoclonal antibodies?
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13:22
8.
Monoclonal Recombinant antibody
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14:34
9.
Nomenclature of Antibody
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15:55
10.
How to make phosphospecific antibodies?
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17:44
11.
Question
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17:54
12.
Protein A, G and L Antibody-Binding Ligands
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18:47
13.
ChIP-PCR/qPCR
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19:55
14.
ChIP on chip
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21:04
15.
ChIP-Seq
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22:58
16.
ATAC-Seq
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23:58
17.
ChIP-seq vs ATAC-seq
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24:32
18.
DNase Seq
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25:08
19.
MNase-seq
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26:41
20.
FAIRE-seq
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27:37
21.
Chromatin Structure Analyses
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28:49
22.
Transposase-Accessible Chromatin with Visualization (ATAC-see)
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29:39
23.
Luciferase Reporter Assay for mRNA Promoter
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32:01
24.
Electrophoretic Mobility Shift Assay (EMSA)
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34:21
25.
DNA Footprinting Assay
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35:28
26.
DNA Pull-Down Assay
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36:31
27.
Mass Spectrometry
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36:53
28.
Tandem Mass Spectrometry
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37:17
29.
enChIP
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38:32
30.
ENCODEEncyclopedia of DNA Elements
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40:28
31.
Applications: Protein-protein interaction
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40:34
32.
Protein Tag
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43:13
33.
GST (glutathione S-transferase) pull-down assay: a technique to test interaction between a tagged protein or the bait (GST, His6, biotin ...) and another protein (test protein, or prey)
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44:10
34.
Immunoprecipitation
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45:01
35.
Western Blotting
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47:43
36.
Consideration of Choosing Antibodies
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49:55
37.
Protein Position is different from what is expected
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50:56
38.
Immunohistochemistry (IHC)
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52:09
39.
Multiplexed protein detection (up to 96 proteins) on FFPE tissue
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54:20
40.
Used to discover protein-protein interactions by testing for physical interactions between two proteinsThe transcription factor is split into two separate fragments: The BD (binding domain): binding to the upstream activating sequence (UAS)Fused with bait